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dc.contributor.advisorDr. Md. Azizul Haque
dc.contributor.authorASHIK, MD. ASHIKUJJAMAN
dc.date.accessioned2022-05-15T08:14:47Z
dc.date.available2022-05-15T08:14:47Z
dc.date.issued2018-12
dc.identifier.urihttp://localhost:8080/xmlui/handle/123456789/1529
dc.descriptionA THESIS BY MD. ASHIKUJJAMAN ASHIK Student ID: 1705247 Session: 2017-2018 Submitted to the Department of Biochemistry and Molecular Biology Hajee Mohammad Danesh Science and Technology University, Dinajpur in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE (M.S.) IN BIOCHEMISTRY AND MOLECULAR BIOLOGYen_US
dc.description.abstractThe world is now facing one of the greatest difficulties of modern time. As she is running out of energy, scientists need to think of a new and alternative way to produce sustainable energy source. Luckily bio-ethanol production from lignocellulosic waste can solve this problem completely. However the structure of lignocellulose poses substantial recalcitrance to the path of ethanol production. In order to produce bioethanol two basic steps are involved; first one is the pretreatment of lignocellulosic waste such as rice straw, maize straw, corn stover, barley straw etc. and the hydrolysis step which can be achieved by enzymatic manipulation using different microbes. Many articles have already reviewed different pretreatment methods and hydrolysis mechanisms in order to conquer the recalcitrant structure of cellulose. However no significant advancement in this criteria has still been achieved as various obstacles such as cellulose crystallinity, degree of polymerization, lignin residues, and hemicellulose content keep getting in the way of our success. The use of bioconsortium in order to break the recalcitrant structure of cellulose has not been done very briefly and appears to promise more than the conventional biological treatments of lignocellulose. Bio-consortium can be the breakthrough that scientists are looking for. As one species of bacteria can’t break through the recalcitrant cellulose, two or three different bacterial strains together in the right environment can produce significant results. In this article a total of two cellulase producing bacterial strains (HSTU-2 and HSTU-3) have been isolated from cow dung and identified at molecular level using 16s rRNA gene sequencing. Both the strains (HSTU-2 and HSTU-3) have been identified as Bacillus sp. and have been submitted to gene bank in National Centre for Biotechnology Information (NCBI). Bacillus sp. HSTU-2 (accession no. MK659878) and Bacillus sp. HSTU-3 (accession no. MG582599.1) have also been run through different bioinformatics software and online tools for their sequence similarity including AT-GC content determination and evolutionary analysis using ‘MEGA X’. Phylogenetic tree has also been described for all the six strains with maximum likelihood method and proper node and branch lengths has been maintained to identify all of these strains. Four more bacterial strains have also been used (HSTU-6, HSTU-7, HSTU-9 and HSTU-10) in this study which have been studied previously in the Molecular biology lab of Hajee Mohammad Danesh Science and Technology University, Dinajpur as part of the bioethanol production research. HSTU-6 (MG582600.1) and HSTU-7 (MG582601.1) are pectinase producers isolated from cow rumen content while HSTU-9 (MG582602.1) and HSTU-10 (MG582603.1) are amylase producing strains which have been isolated from vermicompost. Phylogenetic trees have also been described for all the six strains (HSTU-2, HSTU-3, HSTU-6, HSTU-7, HSTU-9 and HSTU-10) with maximum likelihood method and proper node and branch lengths has been maintained to identify all of these strains. Various biochemical tests have been done using Bacillus sp. HSTU-2 and Bacillus sp. HSTU-3 to identify their metabolic habits. Both of them (Bacillus sp. HSTU-2 and Bacillus sp. HSTU-3) are gram positive bacteria as indicated by gram’s staining test, citrate test and different selective media growth (Gelatin mannitol salt agar, MacConkey agar, Salmonella shigella agar etc) analysis. Both the strains produced acetyl-methyl carbinol from pyruvate as indicated by Voges-Proskauer test. These strains are able to utilize complex sugars such as lactose, maltose and sucrose as depicted by the differential sugar fermentation tests. Bacillus sp. HSTU-2 has been found to be catalase positive while Bacillus sp. HSTU-3 has been detected to utilize cytochrome C. oxidase. Bacillus sp. HSTU-2 and Bacillus sp. HSTU-3 are efficient cellulose degrading bacteria since both strains performed great in the Congo-red agar media with holo zone diameter of 8 mm and 6 mm respectively. In order to prove the hypothesis that these strains can effectively make the perfect bio consortium that can reduce the lignin-hemicellulose content as well as the crystallinity and degree of polymerization, these six strains (HSTU-2, HSTU-3, HSTU-6, HSTU-7, HSTU-9 and HSTU-10) have been used to directly treat four types of fibers (cotton, areca, banana and coir fiber). The strains have been used in pair (amylase, pectinase and cellulase producing pairs) to make several bio consortiums by changing the concentration of bacteria and manipulating the temperature and time of the treatment. In order to determine the structural deformities of cellulose after treatment with the different bio consortiums, the fibers (cotton, areca, coir and banana) have been analyzed by FTIR analysis and found significant improvement of band transmittance at particular wavelengths of cellulose structure indicating band sharpening. The curves clearly indicate the removal of impurities such as lignin, hemicellulose, pectin, waxes etc. Also the XRD analysis have been performed for the treated cotton and areca fiber for determining the crystallinity index (CrI) of cellulose. Astoundingly, after treating the cotton and areca fiber with Bacillus sp. HSTU-2 and Bacillus sp. HSTU-3, the CrI dropped from 31.5% to a staggering 13.69%, which proves that these strains under optimum temperature can overcome the recalcitrance structure of cellulose. Bacillus sp. HSTU-2 and Bacillus sp. HSTU-3 have also been used to treat maize straw in order to see their combined effectiveness in reducing sugar yield as this is the primary concern of the experiment. Both of the strains (Bacillus sp. HSTU-2 and Bacillus sp. HSTU-3) performed splendidly as with a combined dose of HSTU-2 and HSTU-3 the reducing sugar yield have been found 27%, 35%, 43%, 60% and 63% in 20h, 30h, 40h, 50h and 72h timeframe respectively. All of these evidence points out to the fact that the use of these strains in making bio consortium will not only benefit in bioethanol production of lignocellulose but also will be able to overcome the cellulose recalcitrant challenge.en_US
dc.language.isoenen_US
dc.publisherHAJEE MOHAMMAD DANESH SCIENCE AND TECHNOLOGY UNIVERSITY, DINAJPUR.en_US
dc.subjectCELLULASE PRODUCING STRAINSen_US
dc.subjectCONSORTIUM TO DECONSTRUCTen_US
dc.titleMOLECULAR IDENTIFICATION OF CELLULASE PRODUCING STRAINS BACILLUS SP. HSTU-2 AND BACILLUS SP. HSTU-3 AND MAKING A BACTERIAL CONSORTIUM TO DECONSTRUCT THE RECALCITRANT STRUCTURE OF LIGNOCELLULOSEen_US
dc.typeThesisen_US


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